Publication-Do-Not-Shows

Impact of reference design on estimating SARS-CoV-2 lineage abundances from wastewater sequencing data
Background Sequencing of SARS-CoV-2 RNA from wastewater samples has emerged as a valuable tool for detecting the presence and relative …
Eva Aßmann, Shelesh Agrawal, Laura Orschler, Sindy Böttcher, Susanne Lackner, Martin Hölzer
Posted Jul 5, 2024
Link Code Open Data
POCP-nf: an automatic Nextflow pipeline for calculating the percentage of conserved proteins in bacterial taxonomy
Summary Sequence technology advancements have led to an exponential increase in bacterial genomes, necessitating robust taxonomic …
Martin Hölzer
Posted Apr 1, 2024
Link Code Open Data
Integrating cultivation and metagenomics for a multi-kingdom view of skin microbiome diversity and functions
Human skin functions as a physical barrier to foreign pathogen invasion and houses numerous commensals. Shifts in the human skin …
Sara Saheb Kashaf, Diana M Proctor, Clay Deming, Paul Saary, Martin Hölzer, Monica E Taylor, Heidi H Kong, Julia A Segre, Alexandre Almeida, Robert D Finn
Posted Dec 24, 2021
Link Code Metagenome assemblies
Inclusion of Oxford Nanopore long reads improves all microbial and viral metagenome‐assembled genomes from a complex aquifer system
Assembling microbial and viral genomes from metagenomes is a powerful and appealing method to understand structure–function …
Will A Overholt, Martin Hölzer, Patricia Geesink, Celia Diezel, Manja Marz, Kirsten Küsel
Posted Aug 5, 2020
Link
Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells
The unprecedented outbreak of Ebola in West Africa resulted in over 28,000 cases and 11,000 deaths, underlining the need for a better …
Martin Hölzer, Verena Krähling, Fabian Amman, Emanuel Barth, Stephan H Bernhart, Victor AO Carmelo, Maximilian Collatz, Gero Doose, Florian Eggenhofer, Jan Ewald, Jörg Fallmann, Lasse M Feldhahn, Markus Fricke, Juliane Gebauer, Andreas J Gruber, Franziska Hufsky, Henrike Indrischek, Sabina Kanton, Jörg Linde, Nelly Mostajo, Roman Ochsenreiter, Konstantin Riege, Lorena Rivarola-Duarte, Abdullah H Sahyoun, Sita J Saunders, Stefan E Seemann, Andrea Tanzer, Bertram Vogel, Stefanie Wehner, Michael T Wolfinger, Rolf Backofen, Jan Gorodkin, Ivo Grosse, Ivo Hofacker, Steve Hoffmann, Christoph Kaleta, Peter F Stadler, Stephan Becker, Manja Marz
Posted Oct 7, 2016
Link Interactive Gene Viewer Electronic Supplement